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LOC127888598 H3K4me1 hESC enhancer GRCh37_chr17:81040631-81041190 [ Homo sapiens (human) ]

Gene ID: 127888598, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127888598
Gene description
H3K4me1 hESC enhancer GRCh37_chr17:81040631-81041190
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127888598 in Genome Data Viewer
Location:
chromosome: 17
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (83082755..83083314)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (84103141..84103700)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene tubulin folding cofactor D Neighboring gene uncharacterized LOC124904095 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:80935960-80937159 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:80942083-80942584 Neighboring gene Sharpr-MPRA regulatory region 7018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:80968063-80968585 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:80975436-80976388 Neighboring gene uncharacterized LOC124904094 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:81027516-81028068 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:81039455-81040037 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:81041191-81041749 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:81042649-81043176 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:81045109-81045746 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:81045747-81046384 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:81048933-81049568 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:81056168-81057164 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:81066069-81066894 Neighboring gene CAGE-defined high expression enhancer downstream of METRNL Neighboring gene uncharacterized LOC101930496 Neighboring gene meteorin like, glial cell differentiation regulator Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:81081099-81082046 Neighboring gene uncharacterized LOC101929650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:81099229-81099744 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:81099745-81100260 Neighboring gene uncharacterized LOC124904105

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_138185.1 

    Range
    101..660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    83082755..83083314
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187612.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    20514..21073 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    84103141..84103700
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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