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LOC127893603 H3K4me1 hESC enhancer GRCh37_chr20:48040793-48041316 [ Homo sapiens (human) ]

Gene ID: 127893603, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127893603
Gene description
H3K4me1 hESC enhancer GRCh37_chr20:48040793-48041316
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127893603 in Genome Data Viewer
Location:
chromosome: 20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (49424256..49424779)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (51193862..51194385)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (48040793..48041316)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr20:47900044-47900976 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:47902841-47903772 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:47903773-47904704 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18059 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18060 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:47909763-47910696 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:47910697-47911630 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:47911631-47912563 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:47913664-47914226 Neighboring gene small nucleolar RNA, C/D box 12 Neighboring gene ZNFX1 antisense RNA 1 Neighboring gene uncharacterized LOC124904925 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47934991-47935572 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47935573-47936154 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:47940265-47940766 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:47940767-47941266 Neighboring gene uncharacterized LOC105372649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18061 Neighboring gene NANOG hESC enhancer GRCh37_chr20:47985158-47985711 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:47990213-47990475 Neighboring gene potassium voltage-gated channel subfamily B member 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:48041317-48041840 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:48063137-48063648 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48063649-48064158 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48064159-48064670 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12997 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:48121719-48122220 Neighboring gene prostaglandin I2 synthase Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18062 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:48158843-48159119 Neighboring gene uncharacterized LOC101927486 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48184974-48185590 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48185591-48186205 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48196657-48197231 Neighboring gene uncharacterized LOC105372651 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:48212298-48212798

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_143325.1 

    Range
    101..624
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    49424256..49424779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    51193862..51194385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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