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LOC127894080 H3K4me1 hESC enhancer GRCh37_chr20:60603061-60603696 [ Homo sapiens (human) ]

Gene ID: 127894080, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127894080
Gene description
H3K4me1 hESC enhancer GRCh37_chr20:60603061-60603696
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127894080 in Genome Data Viewer
Location:
chromosome: 20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (62028005..62028640)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (63817342..63817977)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (60603061..60603696)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60528727-60529226 Neighboring gene microRNA 1257 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:60538354-60539553 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60540456-60541084 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60541085-60541714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60551058-60551558 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60551559-60552059 Neighboring gene TATA-box binding protein associated factor 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60564347-60565309 Neighboring gene uncharacterized LOC105372704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60578426-60578926 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60578927-60579427 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60589023-60589524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60596697-60597476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60597477-60598254 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18195 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18196 Neighboring gene ribosomal protein L17 pseudogene 48 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60622502-60623100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60629188-60629688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60629689-60630189 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60638627-60639140 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60639141-60639655 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60639656-60640169 Neighboring gene microRNA 3195

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_143778.1 

    Range
    101..736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    62028005..62028640
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    63817342..63817977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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