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LOC127894085 H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60639141-60639655 [ Homo sapiens (human) ]

Gene ID: 127894085, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127894085
Gene description
H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60639141-60639655
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127894085 in Genome Data Viewer
Location:
chromosome: 20
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (62064085..62064599)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (63854895..63855409)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 4 Neighboring gene uncharacterized LOC105372704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60578426-60578926 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60578927-60579427 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60589023-60589524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60596697-60597476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60597477-60598254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60603061-60603696 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18195 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18196 Neighboring gene ribosomal protein L17 pseudogene 48 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60622502-60623100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60629188-60629688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60629689-60630189 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60638627-60639140 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60639656-60640169 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:60640170-60640684 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13094 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13095 Neighboring gene uncharacterized LOC105372705 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:60641713-60642226 Neighboring gene microRNA 3195

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_143783.1 

    Range
    101..615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    62064085..62064599
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    63854895..63855409
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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