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LOC127894143 H3K4me1 hESC enhancer GRCh37_chr20:61173413-61173912 [ Homo sapiens (human) ]

Gene ID: 127894143, updated on 27-Aug-2024

Summary

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Gene symbol
LOC127894143
Gene description
H3K4me1 hESC enhancer GRCh37_chr20:61173413-61173912
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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Location:
chromosome: 20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (62576206..62576705)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64374729..64375228)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene MIR1-1 host gene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61166511-61167012 Neighboring gene microRNA 133a-2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13113 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18205 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61172911-61173412 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61175357-61176308 Neighboring gene ribosomal protein L7 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61186037-61186544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61188976-61189476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61189477-61189977 Neighboring gene long intergenic non-protein coding RNA 2970 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61200859-61201648 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61201649-61202439 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61202440-61203229 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18206 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18207 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18208 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13115 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18209 Neighboring gene uncharacterized LOC124904948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61266847-61267348

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_148148.1 

    Range
    101..600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    62576206..62576705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    64374729..64375228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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