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LOC127894471 OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:27369694-27370507 [ Homo sapiens (human) ]

Gene ID: 127894471, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127894471
Gene description
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:27369694-27370507
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors and is marked by the H3K27ac histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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Location:
chromosome: 21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (25997379..25998192)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (24355515..24356328)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372756 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:27290380-27290953 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:27290954-27291526 Neighboring gene amyloid beta precursor protein Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:27326978-27328177 Neighboring gene RNA, U6 small nuclear 123, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:27333032-27333727 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18320 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:27360167-27360668 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:27370508-27371320 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:27395669-27396168 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:27451148-27451673 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr21:27452711-27453576 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:27453577-27454444 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:27454445-27455310 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:27456082-27456619 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr21:27479739-27480384 Neighboring gene uncharacterized LOC124900466 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:27511930-27513129 Neighboring gene NANOG hESC enhancer GRCh37_chr21:27521254-27521823 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18321 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13235 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:27542299-27542823 Neighboring gene APP divergent transcript Neighboring gene RNA, U6 small nuclear 926, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_144128.1 

    Range
    101..914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    25997379..25998192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    24355515..24356328
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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