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LOC127897689 OCT4-NANOG hESC enhancer GRCh37_chrX:62627697-62628511 [ Homo sapiens (human) ]

Gene ID: 127897689, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127897689
Gene description
OCT4-NANOG hESC enhancer GRCh37_chrX:62627697-62628511
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127897689 in Genome Data Viewer
Location:
chromosome: X
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (63407817..63408631)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (61833088..61833902)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (62627697..62628511)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene SPIN4 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:62550986-62551486 Neighboring gene chromobox 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29705 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29706 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29707 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20874 Neighboring gene spindlin family member 4 Neighboring gene long intergenic non-protein coding RNA 1278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:62712259-62712759 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:62723770-62724270 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:62724271-62724771 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:62780155-62780696 Neighboring gene Cdc42 guanine nucleotide exchange factor 9 Neighboring gene ARHGEF9 intronic transcript 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_147044.1 

    Range
    101..915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    63407817..63408631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    61833088..61833902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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