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LOC128195893 copper-transporting ATPase PAA1, chloroplastic-like [ Vigna angularis (adzuki bean) ]

Gene ID: 128195893, updated on 10-Oct-2024

Summary

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Gene symbol
LOC128195893
Gene description
copper-transporting ATPase PAA1, chloroplastic-like
Locus tag
HKW66_Vig0006110
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC128195893 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 1 NC_068970.1 (49072752..49086080, complement)

Chromosome 1 - NC_068970.1Genomic Context describing neighboring genes Neighboring gene alternative oxidase 3, mitochondrial Neighboring gene uncharacterized LOC108326828 Neighboring gene uncharacterized LOC128195895 Neighboring gene uncharacterized LOC128195896 Neighboring gene alternative oxidase 3, mitochondrial Neighboring gene uncharacterized LOC128195194

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068970.1 Chromosome 1 Reference ASM1680809v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type divalent copper transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in copper ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
copper-transporting ATPase PAA1, chloroplastic-like
Names
Vigan.UMG105600
Vigan.UMG117700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068970.1 Reference ASM1680809v1 Primary Assembly

    Range
    49072752..49086080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052874676.1 → XP_052730636.1  copper-transporting ATPase PAA1, chloroplastic-like isoform X1

    UniProtKB/TrEMBL
    A0A0S3TDU9

  2. XM_052874678.1 → XP_052730638.1  copper-transporting ATPase PAA1, chloroplastic-like isoform X2

Nucleotide Protein
Heading Accession and Version

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