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LOC128196344 pentatricopeptide repeat-containing protein At3g62890-like [ Vigna angularis (adzuki bean) ]

Gene ID: 128196344, updated on 23-Nov-2023

Summary

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Gene symbol
LOC128196344
Gene description
pentatricopeptide repeat-containing protein At3g62890-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC128196344 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 4 NC_068973.1 (13940281..13944971, complement)

Chromosome 4 - NC_068973.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-3-phosphatase SAC1-like Neighboring gene uncharacterized LOC128196345 Neighboring gene pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like Neighboring gene ribonuclease 3-like protein 2 Neighboring gene uncharacterized LOC128196346

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068973.1 Chromosome 4 Reference ASM1680809v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At3g62890-like
Names
Vigan.UMG080900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068973.1 Reference ASM1680809v1 Primary Assembly

    Range
    13940281..13944971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052876921.1 → XP_052732881.1  pentatricopeptide repeat-containing protein At3g62890-like isoform X1

  2. XM_052876923.1 → XP_052732883.1  pentatricopeptide repeat-containing protein At3g62890-like isoform X3

  3. XM_052876922.1 → XP_052732882.1  pentatricopeptide repeat-containing protein At3g62890-like isoform X2

RNA

  1. XR_008248549.1 RNA Sequence

  2. XR_008248548.1 RNA Sequence

Nucleotide Protein
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