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LOC128316689 H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144583221-144583722 [ Homo sapiens (human) ]

Gene ID: 128316689, updated on 12-Sep-2024

Summary

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Gene symbol
LOC128316689
Gene description
H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144583221-144583722
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Jan 2023]
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Genomic context

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See LOC128316689 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (120404563..120405064)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (120417862..120418363)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 (PATCHES) NW_003871056.3 (476137..476638)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100996723 Neighboring gene uncharacterized LOC124904391 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:144504660-144505204 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:144533587-144533917 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:144533911-144534909 Neighboring gene U1 spliceosomal RNA Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:144538085-144538656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:144539249-144539810 Neighboring gene uncharacterized LOC101929788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:144582720-144583220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144592931-144593854 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144593855-144594776 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:144603371-144603926 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:144603927-144604483 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:144604484-144605039 Neighboring gene NBPF member 8 Neighboring gene profilin 1 pseudogene 2 Neighboring gene PDE4DIP pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1601 Neighboring gene uncharacterized LOC107985524

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_149293.1 

    Range
    101..602
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    120404563..120405064
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791753.1 Reference GRCh38.p14 PATCHES

    Range
    21935..22436
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    120417862..120418363
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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