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RAG1 recombination activating 1 [ Nycticebus coucang (slow loris) ]

Gene ID: 128564718, updated on 25-Mar-2024

Summary

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Gene symbol
RAG1
Gene description
recombination activating 1
See related
EnsemblRapid:ENSNCUG00010011630
Gene type
protein coding
RefSeq status
MODEL
Organism
Nycticebus coucang
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Lorisidae; Nycticebus
Orthologs
human mouse all
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Genomic context

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See RAG1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_03 current mNycCou1.pri (GCF_027406575.1) 14 NC_069793.1 (28388311..28391462, complement)

Chromosome 14 - NC_069793.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene intraflagellar transport associated protein Neighboring gene recombination activating 2 Neighboring gene U6 spliceosomal RNA Neighboring gene TNF receptor associated factor 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069793.1 Chromosome 14 Reference mNycCou1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in V(D)J recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in adaptive immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pre-B cell allelic exclusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA recombinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of endodeoxyribonuclease complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V(D)J recombination-activating protein 1
Names
recombination activating protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027406575.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mNycCou1.pri

Genomic

  1. NC_069793.1 Reference mNycCou1.pri

    Range
    28388311..28391462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053560451.1 → XP_053416426.1  V(D)J recombination-activating protein 1

    Related
    ENSNCUP00010010758.1, ENSNCUT00010015898.1
Nucleotide Protein
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