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MMP2 matrix metallopeptidase 2 [ Melozone crissalis (California towhee) ]

Gene ID: 128951154, updated on 3-Aug-2024

Summary

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Gene symbol
MMP2
Gene description
matrix metallopeptidase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Melozone crissalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Melozone
Orthologs
human mouse all
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Genomic context

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See MMP2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current PUWL_Pcris_2 (GCF_028551555.1) Unplaced Scaffold NW_026535785.1 (9649921..9677587, complement)

NW_026535785.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 member 2 Neighboring gene lysophosphatidylcholine acyltransferase 2 Neighboring gene calpain small subunit 2 Neighboring gene iroquois homeobox 6 Neighboring gene uncharacterized LOC128951157 Neighboring gene iroquois homeobox 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026535785 Unplaced Scaffold Reference PUWL_Pcris_2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hypoxia IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tissue remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
72 kDa type IV collagenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028551555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PUWL_Pcris_2

Genomic

  1. NW_026535785.1 Reference PUWL_Pcris_2

    Range
    9649921..9677587 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054296395.1 → XP_054152370.1  72 kDa type IV collagenase

Nucleotide Protein
Heading Accession and Version

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