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HEYL hes related family bHLH transcription factor with YRPW motif like [ Agelaius phoeniceus (red-winged blackbird) ]

Gene ID: 129130028, updated on 3-Aug-2024

Summary

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Gene symbol
HEYL
Gene description
hes related family bHLH transcription factor with YRPW motif like
See related
EnsemblRapid:ENSAPNG00005007034
Gene type
protein coding
RefSeq status
MODEL
Organism
Agelaius phoeniceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Icteridae; Agelaius
Orthologs
human mouse all
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Genomic context

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See HEYL in Genome Data Viewer
Location:
chromosome: 24
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current Agelaius phoeniceus 1.1 (GCF_020745825.1) 24 NC_071697.1 (3423968..3432657)

Chromosome 24 - NC_071697.1Genomic Context describing neighboring genes Neighboring gene proline-rich protein 2-like Neighboring gene hippocalcin like 4 Neighboring gene 5'-nucleotidase, cytosolic IA Neighboring gene poly(A) binding protein cytoplasmic 4 Neighboring gene small nucleolar RNA SNORA55 Neighboring gene small nucleolar RNA SNORA55

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071697.1 Chromosome 24 Reference Agelaius phoeniceus 1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in circulatory system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hairy/enhancer-of-split related with YRPW motif-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_020745825.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Agelaius phoeniceus 1.1 Primary Assembly

Genomic

  1. NC_071697.1 Reference Agelaius phoeniceus 1.1 Primary Assembly

    Range
    3423968..3432657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054648236.1 → XP_054504211.1  hairy/enhancer-of-split related with YRPW motif-like protein

    Related
    ENSAPNP00005011663.1, ENSAPNT00005011964.1
Nucleotide Protein
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Gene LinkOut

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