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LOC129663873 ReSE screen-validated silencer GRCh37_chr16:71808874-71809101 [ Homo sapiens (human) ]

Gene ID: 129663873, updated on 12-Sep-2024

Summary

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Gene symbol
LOC129663873
Gene description
ReSE screen-validated silencer GRCh37_chr16:71808874-71809101
Gene type
biological region
Feature type(s)
regulatory: silencer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic sequence represents an accessible chromatin region used in a lentiviral ReSE (repressive ability of silencer elements) screen that assays for cell survival based on transcriptional repression of an apoptosis-inducing fusion protein. This region was identified as a functional silencer in K562 erythroleukemia cells. [provided by RefSeq, Apr 2023]
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Genomic context

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See LOC129663873 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (71774971..71775198)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (77592175..77592400)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (71808874..71809101)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene PH domain and leucine rich repeat protein phosphatase 2 Neighboring gene uncharacterized LOC124903712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11076 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:71741784-71742412 Neighboring gene small nucleolar RNA, H/ACA box 70D Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:71756941-71757442 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7684 Neighboring gene adaptor related protein complex 1 subunit gamma 1 Neighboring gene small nucleolar RNA, C/D box 71 Neighboring gene parathymosin-like Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:71841868-71842515 Neighboring gene uncharacterized LOC124903714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11078 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11079

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic identification of silencers in human cells. Pang B, et al. Nat Genet, 2020 Mar. PMID 32094911, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_160879.1 

    Range
    101..328
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    71774971..71775198
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    77592175..77592400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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