U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC129664758 ReSE screen-validated silencer GRCh37_chr21:47336390-47336616 [ Homo sapiens (human) ]

Gene ID: 129664758, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC129664758
Gene description
ReSE screen-validated silencer GRCh37_chr21:47336390-47336616
Gene type
biological region
Feature type(s)
regulatory: silencer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic sequence represents an accessible chromatin region used in a lentiviral ReSE (repressive ability of silencer elements) screen that assays for cell survival based on transcriptional repression of an apoptosis-inducing fusion protein. This region was identified as a functional silencer in phorbol 12-myristate 13-acetate-treated (for megakaryocytic differentiation) K562 erythroleukemia cells. [provided by RefSeq, Apr 2023]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC129664758 in Genome Data Viewer
Location:
chromosome: 21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (45916476..45916702)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (44290179..44290405)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (47336390..47336616)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene poly(rC) binding protein 3 Neighboring gene MPRA-validated peak4427 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47255439-47255946 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47257017-47257560 Neighboring gene PCBP3 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47274544-47275220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47275221-47275896 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:47278335-47279534 Neighboring gene uncharacterized LOC124905044 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47300489-47301293 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47308837-47309710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47309711-47310583 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47312061-47312782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47317748-47318248 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47318249-47318749 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47339089-47339588 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47371642-47372327 Neighboring gene Sharpr-MPRA regulatory region 9072 Neighboring gene uncharacterized LOC101928796 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13412 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18596 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47393951-47394751 Neighboring gene uncharacterized LOC105372841 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:47401442-47402304

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Systematic identification of silencers in human cells. Pang B, et al. Nat Genet, 2020 Mar. PMID 32094911, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_161795.1 

    Range
    101..327
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    45916476..45916702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    44290179..44290405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases