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babo TGF-beta receptor type-1 babo [ Episyrphus balteatus (marmalade hoverfly) ]

Gene ID: 129921007, updated on 23-May-2024

Summary

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Gene symbol
babo
Gene description
TGF-beta receptor type-1 babo
See related
EnsemblRapid:ENSEBLG00000007011
Gene type
protein coding
RefSeq status
MODEL
Organism
Episyrphus balteatus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Episyrphus
Orthologs
fruit fly all
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Genomic context

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See babo in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_05 current idEpiBalt1.1 (GCF_945859705.1) 1 NC_079134.1 (169719236..169737542, complement)

Chromosome 1 - NC_079134.1Genomic Context describing neighboring genes Neighboring gene serine protease notopleural Neighboring gene transmembrane serine protease filzig Neighboring gene S-methyl-5'-thioadenosine phosphorylase Neighboring gene Brahma associated protein 55kD

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079134.1 Chromosome 1 Reference idEpiBalt1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BMP signaling components in embryonic transcriptomes of the hover fly Episyrphus balteatus (Syrphidae). Lemke S, et al. BMC Genomics, 2011 May 31. PMID 21627820, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables activin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables activin receptor activity, type I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of activin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TGF-beta receptor type-1
Names
putative baboon protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_945859705.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference idEpiBalt1.1

Genomic

  1. NC_079134.1 Reference idEpiBalt1.1

    Range
    169719236..169737542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056002608.1 → XP_055858583.1  TGF-beta receptor type-1 isoform X6

  2. XM_056002607.1 → XP_055858582.1  TGF-beta receptor type-1 isoform X5

    Related
    ENSEBLP00000008434.1, ENSEBLT00000010845.1

  3. XM_056002605.1 → XP_055858580.1  TGF-beta receptor type-1 isoform X3

  4. XM_056002603.1 → XP_055858578.1  TGF-beta receptor type-1 isoform X1

  5. XM_056002606.1 → XP_055858581.1  TGF-beta receptor type-1 isoform X4

  6. XM_056002604.1 → XP_055858579.1  TGF-beta receptor type-1 isoform X2

    Related
    ENSEBLP00000008420.1, ENSEBLT00000010831.1
Nucleotide Protein
Heading Accession and Version

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