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LOC130062809 uncharacterized LOC130062809 [ Rattus norvegicus (Norway rat) ]

Gene ID: 130062809, updated on 2-Nov-2024

Summary

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Symbol
LOC130062809provided by RGD
Full Name
uncharacterized LOC130062809provided by RGD
Primary source
RGD:329845492
See related
EnsemblRapid:ENSRNOG00000032990 AllianceGenome:RGD:329845492
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See LOC130062809 in Genome Data Viewer
Location:
1q22
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (103036722..103050665, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (93900784..93913081, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120099799 Neighboring gene V-set and immunoglobulin domain containing 10 like Neighboring gene IgLON family member 5 Neighboring gene SIGLEC family like 1 Neighboring gene CD33 molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized LOC130062809

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421478.1 → NP_001408407.1  uncharacterized LOC130062809 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A6JAI3, D3Z8D1
    Related
    ENSRNOP00000024170.5, ENSRNOT00000024170.7

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    103036722..103050665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063270005.1 → XP_063126075.1  uncharacterized LOC130062809 isoform X1

    UniProtKB/TrEMBL
    A6JAI3, D3Z8D1

  2. XM_063270023.1 → XP_063126093.1  uncharacterized LOC130062809 isoform X1

    UniProtKB/TrEMBL
    A6JAI3, D3Z8D1

  3. XM_063270028.1 → XP_063126098.1  uncharacterized LOC130062809 isoform X1

    UniProtKB/TrEMBL
    A6JAI3, D3Z8D1

  4. XM_063270042.1 → XP_063126112.1  uncharacterized LOC130062809 isoform X3

  5. XM_063270015.1 → XP_063126085.1  uncharacterized LOC130062809 isoform X1

    UniProtKB/TrEMBL
    A6JAI3, D3Z8D1

  6. XM_063270046.1 → XP_063126116.1  uncharacterized LOC130062809 isoform X4

  7. XM_063270034.1 → XP_063126104.1  uncharacterized LOC130062809 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases