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hoxc4a homeobox C4a [ Lampris incognitus (smalleye Pacific opah) ]

Gene ID: 130134305, updated on 12-Sep-2024

Summary

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Gene symbol
hoxc4a
Gene description
homeobox C4a
See related
EnsemblRapid:ENSLING00000025866
Gene type
protein coding
RefSeq status
MODEL
Organism
Lampris incognitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Lampriformes; Lampridae; Lampris
Orthologs
human zebrafish all
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Genomic context

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See hoxc4a in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_05 current fLamInc1.hap2 (GCF_029633865.1) 2 NC_079212.1 (22790658..22792727)

Chromosome 2 - NC_079212.1Genomic Context describing neighboring genes Neighboring gene homeobox protein Hox-C6a Neighboring gene homeobox protein Hox-C5a-like Neighboring gene homeobox protein Hox-B3a-like Neighboring gene homeobox C1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079212.1 Chromosome 2 Reference fLamInc1.hap2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic skeletal system morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-C4a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029633865.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLamInc1.hap2

Genomic

  1. NC_079212.1 Reference fLamInc1.hap2

    Range
    22790658..22792727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056302222.1 → XP_056158197.1  homeobox protein Hox-C4a

    Related
    ENSLINP00000046105.1, ENSLINT00000049644.2
Nucleotide Protein
Heading Accession and Version

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