U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC131340774 STARR-seq mESC enhancer starr_12500 [ Mus musculus (house mouse) ]

Gene ID: 131340774, updated on 10-Feb-2024

Summary

Go to the top of the page Help
Gene symbol
LOC131340774
Gene description
STARR-seq mESC enhancer starr_12500
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC131340774 in Genome Data Viewer
Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (18184476..18186572)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr5:17322004-17322304 Neighboring gene STARR-positive B cell enhancer ABC_E6307 Neighboring gene STARR-positive B cell enhancer ABC_E8043 Neighboring gene CD36 molecule Neighboring gene predicted gene, 31612 Neighboring gene STARR-positive B cell enhancer ABC_E9632 Neighboring gene STARR-positive B cell enhancer mm9_chr5:17515822-17516123 Neighboring gene STARR-positive B cell enhancer ABC_E2153 Neighboring gene G protein subunit alpha transducin 3 Neighboring gene STARR-seq mESC enhancer starr_12501 Neighboring gene predicted gene, 54321 Neighboring gene STARR-seq mESC enhancer starr_12503 Neighboring gene STARR-seq mESC enhancer starr_12504 Neighboring gene STARR-seq mESC enhancer starr_12507 Neighboring gene STARR-seq mESC enhancer starr_12508 Neighboring gene STARR-seq mESC enhancer starr_12509 Neighboring gene STARR-seq mESC enhancer starr_12510 Neighboring gene G protein subunit alpha i1 Neighboring gene STARR-seq mESC enhancer starr_12511 Neighboring gene predicted gene 3527

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_210333.1 

    Range
    101..2197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    18184476..18186572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version