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ZK1127.13 Phage tail protein [ Caenorhabditis elegans ]

Gene ID: 13185652, updated on 2-Nov-2024

Summary

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Official Symbol
ZK1127.13
Official Full Name
Phage tail protein
Primary source
WormBase:WBGene00195239
Locus tag
CELE_ZK1127.13
See related
AllianceGenome:WB:WBGene00195239
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in RNA catabolic process. Predicted to be part of ribonuclease H2 complex. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human RNASEH2C (ribonuclease H2 subunit C). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ZK1127.13 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003280.10 (7053301..7053836)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene putative RNA 3'-terminal phosphate cyclase-like protein Neighboring gene TIGR04255 family protein Neighboring gene Protein BCCIP homolog Neighboring gene Uncharacterized protein Neighboring gene Putative cystathionine gamma-lyase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in RNA catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ribonuclease H2 complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Phage tail protein
NP_001380061.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    7053301..7053836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001393113.1 → NP_001380061.1  Phage tail protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1B6Q6
    Conserved Domains (1) summary
    cd09271
    Location:19 → 99
    RNase_H2-C; Ribonuclease H2-C is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids
Nucleotide Protein
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