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B227_gp3 polyprotein [ Gooseberry vein banding associated virus ]

Gene ID: 13229452, updated on 18-Aug-2023

Summary

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Gene symbol
B227_gp3
Gene description
polyprotein
Locus tag
B227_gp3
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gooseberry vein banding associated virus (isolate: RC HC, nat-host: Ribes rubrum cv. Holandsky cerveny)
Lineage
Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus
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Genomic context

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Sequence:
NC_018105.1 (1468..7200)

NC_018105.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_018105.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular analysis of gooseberry vein banding associated virus. Petrzik K, et al. Acta Virol, 2012. PMID 22720701

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
polyprotein
YP_006495799.1
  • ORF 3; contains movement protein, capsid protein, aspartic protease, RTase, RNase H

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_018105.1 Reference assembly

    Range
    1468..7200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_006495799.1 polyprotein [Gooseberry vein banding associated virus]

    See identical proteins and their annotated locations for YP_006495799.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F5BDD5, F5BDD8, F5BDE1, I6U582
    Conserved Domains (5) summary
    cd01647
    Location:1442 → 1628
    RT_LTR; RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the ...
    pfam00078
    Location:1466 → 1628
    RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)
    pfam00098
    Location:882 → 899
    zf-CCHC; Zinc knuckle
    pfam12773
    Location:996 → 1039
    DZR; Double zinc ribbon
    cl14782
    Location:1724 → 1851
    RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
Nucleotide Protein
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