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LOC132408575 STARR-positive B cell enhancer mm9_chr2:19450447-19450747 [ Mus musculus (house mouse) ]

Gene ID: 132408575, updated on 10-Feb-2024

Summary

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Gene symbol
LOC132408575
Gene description
STARR-positive B cell enhancer mm9_chr2:19450447-19450747
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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Genomic context

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See LOC132408575 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (19533631..19533931)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1810010K12 gene Neighboring gene pancreas specific transcription factor 1a, opposite strand Neighboring gene RIKEN cDNA 4921504E06 gene Neighboring gene pancreas specific transcription factor, 1a Neighboring gene STARR-seq mESC enhancer starr_03826 Neighboring gene STARR-positive B cell enhancer mm9_chr2:19427465-19427766 Neighboring gene STARR-seq mESC enhancer starr_03827 Neighboring gene predicted gene, 39764 Neighboring gene STARR-seq mESC enhancer starr_03829 Neighboring gene STARR-seq mESC enhancer starr_03830 Neighboring gene STARR-positive B cell enhancer ABC_E5895 Neighboring gene STARR-positive B cell enhancer ABC_E5896 Neighboring gene predicted gene 13348

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene regulatory networks STARR-ing B cells. Martínez de Paz A, et al. Nat Immunol, 2020 Feb. PMID 31873293, Free PMC Article
  2. Charting the cis-regulome of activated B cells by coupling structural and functional genomics. Chaudhri VK, et al. Nat Immunol, 2020 Feb. PMID 31873292

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_232433.1 

    Range
    101..401
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    19533631..19533931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version