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LOC132442076 STARR-positive B cell enhancer ABC_E5263 [ Mus musculus (house mouse) ]

Gene ID: 132442076, updated on 10-Feb-2024

Summary

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Gene symbol
LOC132442076
Gene description
STARR-positive B cell enhancer ABC_E5263
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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Genomic context

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See LOC132442076 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (88918795..88919096)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene coilin Neighboring gene STARR-seq mESC enhancer starr_30379 Neighboring gene STARR-seq mESC enhancer starr_30380 Neighboring gene STARR-positive B cell enhancer ABC_E9837 Neighboring gene predicted gene 11496 Neighboring gene tripartite motif-containing 25 Neighboring gene STARR-positive B cell enhancer ABC_E2363 Neighboring gene STARR-positive B cell enhancer ABC_E5264 Neighboring gene diacylglycerol kinase, epsilon Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:88919911-88920094 Neighboring gene STARR-positive B cell enhancer ABC_E1840 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:88927428-88927537 Neighboring gene STARR-seq mESC enhancer starr_30387 Neighboring gene diacylglycerol kinase, epsilon, opposite strand Neighboring gene STARR-positive B cell enhancer ABC_E7043 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:88938900-88939236 Neighboring gene predicted gene 525 Neighboring gene STARR-positive B cell enhancer ABC_E8442 Neighboring gene predicted gene, 22534

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene regulatory networks STARR-ing B cells. Martínez de Paz A, et al. Nat Immunol, 2020 Feb. PMID 31873293, Free PMC Article
  2. Charting the cis-regulome of activated B cells by coupling structural and functional genomics. Chaudhri VK, et al. Nat Immunol, 2020 Feb. PMID 31873292

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_238498.1 

    Range
    101..402
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    88918795..88919096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version