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LOC133534725 odorant receptor 49b-like [ Cydia pomonella (codling moth) ]

Gene ID: 133534725, updated on 28-Dec-2023

Summary

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Gene symbol
LOC133534725
Gene description
odorant receptor 49b-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cydia pomonella
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Cydia
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Genomic context

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See LOC133534725 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_12 current ilCydPomo1 (GCF_033807575.1) 2 NC_084704.1 (24898038..24907003, complement)

Chromosome 2 - NC_084704.1Genomic Context describing neighboring genes Neighboring gene sec1 family domain containing Slh Neighboring gene uncharacterized LOC133534728 Neighboring gene Calcium/calmodulin-dependent protein kinase I Neighboring gene discs large 1 Neighboring gene ribosomal protein L9 Neighboring gene mitochondrial ribosomal protein L46

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084704.1 Chromosome 2 Reference ilCydPomo1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Alternative Splicing of the CpomOR53 Gene Produces Three Transcripts Expressed in Codling Moth (Lepidoptera: Tortricidae) Antennae. Garczynski SF, et al. J Econ Entomol, 2019 Mar 21. PMID 30535047
  2. Putative chemosensory receptors of the codling moth, Cydia pomonella, identified by antennal transcriptome analysis. Bengtsson JM, et al. PLoS One, 2012. PMID 22363688, Free PMC Article
  3. The chemosensory receptors of codling moth Cydia pomonella-expression in larvae and adults. Walker WB 3rd, et al. Sci Rep, 2016 Mar 23. PMID 27006164, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables odorant binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables olfactory receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of chemical stimulus involved in sensory perception of smell IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory perception of smell IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
odorant receptor 49b-like; odorant receptor coreceptor-like
Names
putative odorant receptor OR53
putative odorant receptor OR53a
putative odorant receptor OR53b
putative odorant receptor OR53c

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_033807575.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ilCydPomo1

Genomic

  1. NC_084704.1 Reference ilCydPomo1

    Range
    24898038..24907003 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061873965.1 → XP_061729949.1  odorant receptor coreceptor-like isoform X1

  2. XM_061873967.1 → XP_061729951.1  odorant receptor 49b-like isoform X3

  3. XM_061873966.1 → XP_061729950.1  odorant receptor 49b-like isoform X2

Nucleotide Protein
Heading Accession and Version