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thumpd3 THUMP domain containing 3 [ Nerophis ophidion (straightnose pipefish) ]

Gene ID: 133570060, updated on 10-Jul-2024

Summary

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Gene symbol
thumpd3
Gene description
THUMP domain containing 3
See related
EnsemblRapid:ENSNOPG00005028664
Gene type
protein coding
RefSeq status
MODEL
Organism
Nerophis ophidion
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Nerophis
Orthologs
human zebrafish all
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Genomic context

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See thumpd3 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
12
Annotation release Status Assembly LG Location
RS_2023_12 current RoL_Noph_v1.0 (GCF_033978795.1) LG16 NC_084626.1 (9542367..9565049)

Linkage Group LG16 - NC_084626.1Genomic Context describing neighboring genes Neighboring gene RAD18 E3 ubiquitin protein ligase Neighboring gene SLIT-ROBO Rho GTPase activating protein 3 Neighboring gene uncharacterized LOC133570058 Neighboring gene prostacyclin synthase-like Neighboring gene uncharacterized LOC133570062 Neighboring gene potassium voltage-gated channel subfamily B member 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084626.1 Chromosome LG16 Reference RoL_Noph_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THUMP domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_033978795.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Noph_v1.0

Genomic

  1. NC_084626.1 Reference RoL_Noph_v1.0

    Range
    9542367..9565049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061922706.1 → XP_061778690.1  THUMP domain-containing protein 3

    Related
    ENSNOPP00005047942.1, ENSNOPT00005061871.1

  2. XM_061922705.1 → XP_061778689.1  THUMP domain-containing protein 3

    Related
    ENSNOPP00005047953.1, ENSNOPT00005061888.1

  3. XM_061922707.1 → XP_061778691.1  THUMP domain-containing protein 3

    Related
    ENSNOPP00005047940.1, ENSNOPT00005061869.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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