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guca1ab.2 guanylate cyclase activator 1Ab.2 [ Nerophis ophidion (straightnose pipefish) ]

Gene ID: 133570070, updated on 29-Mar-2024

Summary

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Gene symbol
guca1ab.2
Gene description
guanylate cyclase activator 1Ab.2
Gene type
protein coding
RefSeq status
MODEL
Organism
Nerophis ophidion
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Nerophis
Orthologs
zebrafish all
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Genomic context

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See guca1ab.2 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
5
Annotation release Status Assembly LG Location
RS_2023_12 current RoL_Noph_v1.0 (GCF_033978795.1) LG16 NC_084626.1 (10054257..10066029)

Linkage Group LG16 - NC_084626.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C6orf132 homolog Neighboring gene girdin-like Neighboring gene interferon regulatory factor 6 Neighboring gene EPS8 signaling adaptor L3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084626.1 Chromosome LG16 Reference RoL_Noph_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium sensitive guanylate cyclase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of guanylate cyclase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cone photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor inner segment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
guanylyl cyclase-activating protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_033978795.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Noph_v1.0

Genomic

  1. NC_084626.1 Reference RoL_Noph_v1.0

    Range
    10054257..10066029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061922724.1 → XP_061778708.1  guanylyl cyclase-activating protein 1 isoform X1

  2. XM_061922725.1 → XP_061778709.1  guanylyl cyclase-activating protein 1 isoform X2

Nucleotide Protein
Heading Accession and Version