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sod1 superoxide dismutase 1, soluble [ Platichthys flesus (European flounder) ]

Gene ID: 133969670, updated on 29-Mar-2024

Summary

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Gene symbol
sod1
Gene description
superoxide dismutase 1, soluble
Gene type
protein coding
RefSeq status
MODEL
Organism
Platichthys flesus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Platichthys
Orthologs
human zebrafish all
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Genomic context

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See sod1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_01 current fPlaFle2.1 (GCF_949316205.1) 15 NC_084959.1 (4779290..4782398, complement)

Chromosome 15 - NC_084959.1Genomic Context describing neighboring genes Neighboring gene glutamate receptor ionotropic, kainate 1-like Neighboring gene rho guanine nucleotide exchange factor TIAM1-like Neighboring gene SR-related CTD-associated factor 4a Neighboring gene hormonally up-regulated Neu-associated kinase Neighboring gene MIS18 kinetochore protein A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084959.1 Chromosome 15 Reference fPlaFle2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A DNA expression array to detect toxic stress response in European flounder (Platichthys flesus). Williams TD, et al. Aquat Toxicol, 2003 Oct 29. PMID 12946615
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in removal of superoxide radicals IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
superoxide dismutase [Cu-Zn]
Names
Cu/Zn superoxide dismutase
Superoxide dismutase Cu-Zn
sod 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949316205.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPlaFle2.1

Genomic

  1. NC_084959.1 Reference fPlaFle2.1

    Range
    4779290..4782398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062406294.1 → XP_062262278.1  superoxide dismutase [Cu-Zn]

Nucleotide Protein
Heading Accession and Version

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