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EMG1 EMG1 N1-specific pseudouridine methyltransferase [ Cinclus cinclus ]

Gene ID: 134058291, updated on 3-Aug-2024

Summary

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Gene symbol
EMG1
Gene description
EMG1 N1-specific pseudouridine methyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Cinclus cinclus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Cinclidae; Cinclus
Orthologs
human mouse all
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Genomic context

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See EMG1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_01 current bCinCin1.1 (GCF_963662255.1) 2 NC_085047.1 (30307589..30311768)

Chromosome 2 - NC_085047.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase non-receptor type 6 Neighboring gene prohibitin 2 Neighboring gene lysophosphatidylcholine acyltransferase 3 Neighboring gene complement C1s

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_085047.1 Chromosome 2 Reference bCinCin1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA (pseudouridine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA base methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosomal RNA small subunit methyltransferase NEP1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963662255.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCinCin1.1

Genomic

  1. NC_085047.1 Reference bCinCin1.1

    Range
    30307589..30311768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062515549.1 → XP_062371533.1  ribosomal RNA small subunit methyltransferase NEP1

Nucleotide Protein
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