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CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin [ Melospiza melodia melodia ]

Gene ID: 134434542, updated on 3-Aug-2024

Summary

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Gene symbol
CLN3
Gene description
CLN3 lysosomal/endosomal transmembrane protein, battenin
Gene type
protein coding
RefSeq status
MODEL
Organism
Melospiza melodia melodia (sub-species: melodia)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Melospiza
Orthologs
human mouse all
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Genomic context

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See CLN3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current bMelMel2.pri (GCF_035770615.1) Unplaced Scaffold NW_026948704.1 (121..13645)

NW_026948704.1Genomic Context describing neighboring genes Neighboring gene myc-associated zinc finger protein-like Neighboring gene uncharacterized LOC134434546

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026948704 Unplaced Scaffold Reference bMelMel2.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in lysosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of intracellular pH IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
battenin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035770615.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bMelMel2.pri

Genomic

  1. NW_026948704.1 Reference bMelMel2.pri

    Range
    121..13645
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063183213.1 → XP_063039283.1  battenin

  2. XM_063183214.1 → XP_063039284.1  battenin

Nucleotide Protein
Heading Accession and Version

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