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ryr3 ryanodine receptor 3 [ Amia calva (bowfin) ]

Gene ID: 136717167, updated on 25-Jul-2024

Summary

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Gene symbol
ryr3
Gene description
ryanodine receptor 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Amia calva
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Amiiformes; Amiidae; Amia
Orthologs
human zebrafish all
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Genomic context

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See ryr3 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
103
Annotation release Status Assembly Chr Location
RS_2024_07 current fAmiCal2.hap1 (GCF_036373705.1) 21 NC_089870.1 (7807668..7954618)

Chromosome 21 - NC_089870.1Genomic Context describing neighboring genes Neighboring gene formin 1 Neighboring gene formin-1-like Neighboring gene apoptosis, caspase activation inhibitor Neighboring gene cholinergic receptor, muscarinic 5b Neighboring gene uncharacterized LOC136717173

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089870.1 Chromosome 21 Reference fAmiCal2.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ryanodine-sensitive calcium-release channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in release of sequestered calcium ion into cytosol by sarcoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in striated muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in smooth endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ryanodine receptor 3
Names
ryanodine receptor 3-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036373705.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAmiCal2.hap1

Genomic

  1. NC_089870.1 Reference fAmiCal2.hap1

    Range
    7807668..7954618
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066694653.1 → XP_066550750.1  ryanodine receptor 3 isoform X1

  2. XM_066694654.1 → XP_066550751.1  ryanodine receptor 3 isoform X2

  3. XM_066694655.1 → XP_066550752.1  ryanodine receptor 3 isoform X3

Nucleotide Protein
Heading Accession and Version

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