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C15orf32 chromosome 15 putative open reading frame 32 [ Homo sapiens (human) ]

Gene ID: 145858, updated on 5-Mar-2024

Summary

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Official Symbol
C15orf32provided by HGNC
Official Full Name
chromosome 15 putative open reading frame 32provided by HGNC
Primary source
HGNC:HGNC:26549
See related
Ensembl:ENSG00000183643 AllianceGenome:HGNC:26549
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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Location:
15q26.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (92471677..92501117)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (90234105..90263542)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (93014907..93044347)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:92972458-92973657 Neighboring gene enolase 1 pseudogene 2 Neighboring gene uncharacterized LOC104613533 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:93053451-93053972 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:93061329-93061830 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:93064789-93065381 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:93105459-93105998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:93105999-93106536 Neighboring gene long intergenic non-protein coding RNA 930 Neighboring gene MPRA-validated peak2428 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:93156777-93157278 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10112 Neighboring gene uncharacterized LOC124903559 Neighboring gene family with sequence similarity 174 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide association study of bipolar I disorder in the Han Chinese population. Lee MT, et al. Mol Psychiatry, 2011 May. PMID 20386566
  2. A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications. Heath AC, et al. Biol Psychiatry, 2011 Sep 15. PMID 21529783, Free PMC Article
  3. Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens. Rubicz R, et al. Genet Epidemiol, 2014 Jul. PMID 24962563, Free PMC Article
  4. Framingham Heart Study genome-wide association: results for pulmonary function measures. Wilk JB, et al. BMC Med Genet, 2007 Sep 19. PMID 17903307, Free PMC Article
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.
EBI GWAS Catalog
Framingham Heart Study genome-wide association: results for pulmonary function measures.
EBI GWAS Catalog
Genome-wide association study of bipolar I disorder in the Han Chinese population.
EBI GWAS Catalog
Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Other Names

  • uncharacterized protein C15orf32

Clone Names

  • FLJ32831, MGC129836, MGC129837

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_161370.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090985
    Related
    ENST00000624458.1

  2. NR_161371.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090985

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    92471677..92501117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    90234105..90263542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001301106.1: Suppressed sequence

    Description
    NM_001301106.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  2. NM_153040.2: Suppressed sequence

    Description
    NM_153040.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q32M92.2 GenPept UniProtKB/Swiss-Prot:Q32M92

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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