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PF_RS01080 DNA polymerase [ Pyrococcus furiosus DSM 3638 ]

Gene ID: 1468044, updated on 24-Oct-2024

Summary

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Gene symbol
PF_RS01080
Gene description
DNA polymerase
Locus tag
PF_RS01080
Gene type
protein coding
Organism
Pyrococcus furiosus DSM 3638 (strain: DSM 3638, type-material: type strain of Pyrococcus furiosus)
Lineage
Archaea; Methanobacteriati; Methanobacteriota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus
Old locus tag
PF0212
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Genomic context

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Sequence:
NC_003413.1 (228606..230933, complement)

NC_003413.1Genomic Context describing neighboring genes Neighboring gene argininosuccinate lyase Neighboring gene lysine biosynthesis protein LysX Neighboring gene radical SAM protein Neighboring gene METTL5 family protein Neighboring gene MBL fold metallo-hydrolase Neighboring gene n-type ATP pyrophosphatase Neighboring gene phosphopyruvate hydratase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003413.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structures of an apo and a binary complex of an evolved archeal B family DNA polymerase capable of synthesising highly cy-dye labelled DNA. Wynne SA, et al. PLoS One, 2013. PMID 23940661, Free PMC Article
  2. Probing the interaction of archaeal DNA polymerases with deaminated bases using X-ray crystallography and non-hydrogen bonding isosteric base analogues. Killelea T, et al. Biochemistry, 2010 Jul 13. PMID 20527806, Free PMC Article
  3. Uracil recognition in archaeal DNA polymerases captured by X-ray crystallography. Firbank SJ, et al. J Mol Biol, 2008 Sep 5. PMID 18614176
  4. Physical interaction between proliferating cell nuclear antigen and replication factor C from Pyrococcus furiosus. Matsumiya S, et al. Genes Cells, 2002 Sep. PMID 12296822
  5. Crystal structure of a thermostable type B DNA polymerase from Thermococcus gorgonarius. Hopfner KP, et al. Proc Natl Acad Sci U S A, 1999 Mar 30. PMID 10097083, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The crystal structures of the apo Pfu-E10 and a Pfu-E10:DNA binary complex.
    Title: Structures of an apo and a binary complex of an evolved archeal B family DNA polymerase capable of synthesising highly cy-dye labelled DNA.
Submit: New GeneRIF Correction

General protein information

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Preferred Names
DNA polymerase
WP_011011325.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003413.1 Reference assembly

    Range
    228606..230933 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_011011325.1 MULTISPECIES: DNA polymerase [Pyrococcus]

    See identical proteins and their annotated locations for WP_011011325.1

    UniProtKB/Swiss-Prot
    P61875, P61876, P80061, P95584
    UniProtKB/TrEMBL
    A0A5C0XMA4, I6UWS9
    Conserved Domains (1) summary
    COG0417
    Location:6 → 769
    PolB; DNA polymerase elongation subunit (family B) [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P61875.1

Gene LinkOut

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Other Literature Sources
Research Materials