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LOC148696 uncharacterized LOC148696 [ Homo sapiens (human) ]

Gene ID: 148696, updated on 17-Jun-2024

Summary

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Gene symbol
LOC148696
Gene description
uncharacterized LOC148696
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC148696 in Genome Data Viewer
Location:
1q32.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (207818379..207822596)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (207065127..207069344)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (207991724..207995941)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:207979012-207980211 Neighboring gene MIR29B2 and MIR29C host gene Neighboring gene microRNA 29b-2 Neighboring gene microRNA 29c Neighboring gene Sharpr-MPRA regulatory region 9321 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2453 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1775 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2454 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2455 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2456 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2457 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2458 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2459 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2460 Neighboring gene CD34 molecule Neighboring gene uncharacterized LOC107985253 Neighboring gene NANOG hESC enhancer GRCh37_chr1:208091350-208091981 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:208131807-208132308 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:208132309-208132808 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2461 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:208137516-208138045 Neighboring gene long intergenic non-protein coding RNA 2767

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits. Cho YS, et al. Nat Genet, 2009 May. PMID 19396169
  2. High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. Uren PJ, et al. RNA Biol, 2016. PMID 26760575, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Clone Names

  • FLJ43880

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026817.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK125868, AL035209, AL137491

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    207818379..207822596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    207065127..207069344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039568.1: Suppressed sequence

    Description
    NM_001039568.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate and there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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