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ANXA2R-AS1 ANXA2R antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 153684, updated on 28-Oct-2024

Summary

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Official Symbol
ANXA2R-AS1provided by HGNC
Official Full Name
ANXA2R antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:27208
See related
Ensembl:ENSG00000215068 AllianceGenome:HGNC:27208
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in prostate (RPKM 2.3), spleen (RPKM 2.3) and 23 other tissues See more
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Genomic context

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See ANXA2R-AS1 in Genome Data Viewer
Location:
5p12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (43042134..43045268)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (43294995..43298174)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (43042236..43045370)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC643977 Neighboring gene uncharacterized LOC105374746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22517 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22518 Neighboring gene Sharpr-MPRA regulatory region 2050 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43000051-43000552 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43000553-43001052 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:43007431-43008283 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43010287-43010787 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22520 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22521 Neighboring gene ANXA2R overlapping transcript 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43018214-43018736 Neighboring gene uncharacterized LOC105374748 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22523 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43033815-43034354 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43034355-43034892 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:43039303-43039843 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22526 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15989 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22528 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43042769-43043306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43043307-43043842 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43044419-43044918 Neighboring gene annexin A2 receptor Neighboring gene Sharpr-MPRA regulatory region 2707 Neighboring gene uncharacterized LOC100132356 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22532 Neighboring gene uncharacterized LOC100506639 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:43073915-43074416 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:43074417-43074916 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43078210-43078763 Neighboring gene uncharacterized LOC124900972

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Clone Names

  • MGC120598, AC025171.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015447.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    BC101385
    Related
    ENST00000399543.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    43042134..43045268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    43294995..43298174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_194290.1: Suppressed sequence

    Description
    NM_194290.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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