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ACTN1-DT ACTN1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 161159, updated on 10-Oct-2023

Summary

Official Symbol
ACTN1-DTprovided by HGNC
Official Full Name
ACTN1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:20131
See related
Ensembl:ENSG00000259062 AllianceGenome:HGNC:20131
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf84; ACTN1-AS1
Expression
Low expression observed in reference dataset See more
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Genomic context

See ACTN1-DT in Genome Data Viewer
Location:
14q24.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (68979682..68987463)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (63188740..63196517)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (69446399..69454180)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene actinin alpha 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69405059-69405892 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69405893-69406726 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69408246-69409036 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69409037-69409826 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69414806-69415354 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:69417212-69418411 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69418945-69419802 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69421427-69422153 Neighboring gene BANF1 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69422154-69422879 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69428631-69429326 Neighboring gene uncharacterized LOC124903336 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69434488-69435326 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69439113-69440068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69440086-69440586 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69444887-69445886 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:69445887-69446885 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:69471586-69472785 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69480951-69481913 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69504114-69504810 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69504811-69505508 Neighboring gene ribosomal protein S29 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69515530-69516030 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:69521614-69522813 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:69522944-69523511 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8632 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8633 Neighboring gene DDB1 and CUL4 associated factor 5 Neighboring gene DEAD-box helicase 18 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_073422.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DB029126
    Related
    ENST00000553961.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    68979682..68987463
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    63188740..63196517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)