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ZNF433 zinc finger protein 433 [ Homo sapiens (human) ]

Gene ID: 163059, updated on 28-Oct-2024

Summary

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Official Symbol
ZNF433provided by HGNC
Official Full Name
zinc finger protein 433provided by HGNC
Primary source
HGNC:HGNC:20811
See related
Ensembl:ENSG00000197647 AllianceGenome:HGNC:20811
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Oct 2024]
Expression
Broad expression in testis (RPKM 9.0), thyroid (RPKM 2.5) and 21 other tissues See more
Orthologs
all
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Genomic context

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See ZNF433 in Genome Data Viewer
Location:
19p13.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (12014715..12035679, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (12142922..12163886, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (12125530..12146494, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 69 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:12074983-12075936 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10136 Neighboring gene zinc finger protein 763 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:12098284-12099226 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:12099227-12100168 Neighboring gene ZNF433 and ZNF878 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14042 Neighboring gene RNA, 5S ribosomal pseudogene 464 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10137 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10138 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10139 Neighboring gene RNA, 5S ribosomal pseudogene 465 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10140 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:12163610-12164115 Neighboring gene zinc finger protein 878 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14043 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10141 Neighboring gene RNA, 5S ribosomal pseudogene 466 Neighboring gene zinc finger protein 844

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The Identification of Zinc-Finger Protein 433 as a Possible Prognostic Biomarker for Clear-Cell Renal Cell Carcinoma. Heyliger SO, et al. Biomolecules, 2021 Aug 12. PMID 34439859, Free PMC Article
  2. Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis. Nischwitz S, et al. J Neuroimmunol, 2010 Oct 8. PMID 20598377
  3. Assessment of community efforts to advance network-based prediction of protein-protein interactions. Wang XW, et al. Nat Commun, 2023 Mar 22. PMID 36949045, Free PMC Article
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
  5. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The Identification of Zinc-Finger Protein 433 as a Possible Prognostic Biomarker for Clear-Cell Renal Cell Carcinoma.
    Title: The Identification of Zinc-Finger Protein 433 as a Possible Prognostic Biomarker for Clear-Cell Renal Cell Carcinoma.
  2. ZNF433 has been identified as a candidate gene in a genome-wide association study of German multiple sclerosis patients.
    Title: Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
  3. Observational study and genome-wide association study of gene-disease association. (HuGE Navigator)
    Title: Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ40981

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 433

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080411.3 → NP_001073880.1  zinc finger protein 433 isoform 1

    See identical proteins and their annotated locations for NP_001073880.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest isoform (1).
    Source sequence(s)
    AC008770, AK098300, DB515835
    Consensus CDS
    CCDS45983.1
    UniProtKB/Swiss-Prot
    Q86VX3, Q8N7K0
    Related
    ENSP00000339767.6, ENST00000344980.11
    Conserved Domains (5) summary
    smart00349
    Location:7 → 49
    KRAB; krueppel associated box
    COG5048
    Location:197 → 603
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:228 → 248
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 46
    KRAB; KRAB box
    pfam13465
    Location:240 → 265
    zf-H2C2_2; Zinc-finger double domain

  2. NM_001308346.2 → NP_001295275.1  zinc finger protein 433 isoform 2

    See identical proteins and their annotated locations for NP_001295275.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate exon in the 5' coding region, which results in use of a downstream start codon compared to variant 1. It encodes isoform 2, which has a shorter N-terminus than isoform 1.
    Source sequence(s)
    AC008770, BC047412, DB454511, DB515835
    Consensus CDS
    CCDS92523.1
    UniProtKB/TrEMBL
    F8W0C9
    Related
    ENSP00000447205.2, ENST00000550745.3
    Conserved Domains (5) summary
    smart00349
    Location:6 → 48
    KRAB; krueppel associated box
    COG5048
    Location:196 → 602
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:227 → 247
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:6 → 45
    KRAB; KRAB box
    pfam13465
    Location:239 → 264
    zf-H2C2_2; Zinc-finger double domain

  3. NM_001308348.2 → NP_001295277.1  zinc finger protein 433 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 5' coding region compared to variant 1. It encodes isoform 3, which is shorter than isoform 1.
    Source sequence(s)
    AC008770, BC047412, CN345816, DA452530, DB515835
    Consensus CDS
    CCDS92525.1
    UniProtKB/TrEMBL
    F8VTV7
    Related
    ENSP00000448099.2, ENST00000550507.7
    Conserved Domains (4) summary
    COG5048
    Location:194 → 600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:225 → 245
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:3 → 44
    KRAB; KRAB box
    pfam13465
    Location:629 → 654
    zf-H2C2_2; Zinc-finger double domain

  4. NM_001308351.2 → NP_001295280.1  zinc finger protein 433 isoform 4

    See identical proteins and their annotated locations for NP_001295280.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and uses two alternate exons and an alternate splice site in the 5' coding region, which results in use of a downstream start codon compared to variant 1. It encodes isoform 4, which has a shorter N-terminus than isoform 1. Variants 4, 5, and 6 encode the same isoform.
    Source sequence(s)
    AC008770, BC047412, BI831553, DB515835
    Consensus CDS
    CCDS77240.1
    Conserved Domains (2) summary
    COG5048
    Location:162 → 568
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:193 → 213
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. NM_001308355.2 → NP_001295284.1  zinc finger protein 433 isoform 4

    See identical proteins and their annotated locations for NP_001295284.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR and uses an alternate exon and alternate splice site in the 5' coding region, which results in use of a downstream start codon compared to variant 1. It encodes isoform 4, which has a shorter N-terminus compared to isoform 1. Variants 4, 5, and 6 encode the same isoform.
    Source sequence(s)
    AC008770, BC047412, DA452530, DB450226, DB515835
    Consensus CDS
    CCDS77240.1
    Related
    ENSP00000448806.2, ENST00000547560.6
    Conserved Domains (2) summary
    COG5048
    Location:162 → 568
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:193 → 213
    ZF_C2H2; C2H2 Zn finger [structural motif]

  6. NM_001308357.2 → NP_001295286.1  zinc finger protein 433 isoform 4

    See identical proteins and their annotated locations for NP_001295286.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR and uses an alternate exon and alternate splice site in the 5' coding region, which results in use of a downstream start codon compared to variant 1. It encodes isoform 4, which has a shorter N-terminus compared to isoform 1. Variants 4, 5, and 6 encode the same isoform.
    Source sequence(s)
    AC008770, BC047412, DA452530, DB515835
    Consensus CDS
    CCDS77240.1
    Related
    ENSP00000393416.2, ENST00000419886.7
    Conserved Domains (2) summary
    COG5048
    Location:162 → 568
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:193 → 213
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    12014715..12035679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011527725.3 → XP_011526027.1  zinc finger protein 433 isoform X2

    See identical proteins and their annotated locations for XP_011526027.1

    UniProtKB/TrEMBL
    C9JQA6, F8VU36
    Related
    ENSP00000447951.2, ENST00000478765.6
    Conserved Domains (5) summary
    smart00349
    Location:18 → 60
    KRAB; krueppel associated box
    COG5048
    Location:208 → 614
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:239 → 259
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:18 → 57
    KRAB; KRAB box
    pfam13465
    Location:251 → 276
    zf-H2C2_2; Zinc-finger double domain

  2. XM_011527729.3 → XP_011526031.1  zinc finger protein 433 isoform X3

    See identical proteins and their annotated locations for XP_011526031.1

    UniProtKB/TrEMBL
    F8W0C9
    Related
    ENSP00000414857.3, ENST00000455504.7
    Conserved Domains (5) summary
    smart00349
    Location:6 → 48
    KRAB; krueppel associated box
    COG5048
    Location:196 → 602
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:227 → 247
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:6 → 45
    KRAB; KRAB box
    pfam13465
    Location:239 → 264
    zf-H2C2_2; Zinc-finger double domain

  3. XM_011527728.3 → XP_011526030.1  zinc finger protein 433 isoform X3

    See identical proteins and their annotated locations for XP_011526030.1

    UniProtKB/TrEMBL
    F8W0C9
    Conserved Domains (5) summary
    smart00349
    Location:6 → 48
    KRAB; krueppel associated box
    COG5048
    Location:196 → 602
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:227 → 247
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:6 → 45
    KRAB; KRAB box
    pfam13465
    Location:239 → 264
    zf-H2C2_2; Zinc-finger double domain

  4. XM_047438319.1 → XP_047294275.1  zinc finger protein 433 isoform X1

  5. XM_006722661.4 → XP_006722724.1  zinc finger protein 433 isoform X4

    See identical proteins and their annotated locations for XP_006722724.1

    Conserved Domains (2) summary
    COG5048
    Location:162 → 568
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:193 → 213
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    12142922..12163886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054320061.1 → XP_054176036.1  zinc finger protein 433 isoform X2

    UniProtKB/TrEMBL
    C9JQA6, F8VU36

  2. XM_054320063.1 → XP_054176038.1  zinc finger protein 433 isoform X3

    UniProtKB/TrEMBL
    F8W0C9

  3. XM_054320062.1 → XP_054176037.1  zinc finger protein 433 isoform X3

    UniProtKB/TrEMBL
    F8W0C9

  4. XM_054320060.1 → XP_054176035.1  zinc finger protein 433 isoform X1

  5. XM_054320064.1 → XP_054176039.1  zinc finger protein 433 isoform X4

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_152602.1: Suppressed sequence

    Description
    NM_152602.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from laboratory mouse: 3000002G13Rik (GeneID:70227).
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8N7K0.1 GenPept UniProtKB/Swiss-Prot:Q8N7K0

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