U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Irf2 interferon regulatory factor 2 [ Mus musculus (house mouse) ]

Gene ID: 16363, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Irf2provided by MGI
Official Full Name
interferon regulatory factor 2provided by MGI
Primary source
MGI:MGI:96591
See related
Ensembl:ENSMUSG00000031627 AllianceGenome:MGI:96591
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Irf-2; 9830146E22Rik
Summary
Enables DNA-binding transcription factor activity. Involved in regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; focal adhesion; and nucleoplasm. Predicted to be active in nucleus. Is expressed in eye; genitourinary system; heart; and limb. Orthologous to human IRF2 (interferon regulatory factor 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in spleen adult (RPKM 5.7), colon adult (RPKM 4.6) and 28 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Irf2 in Genome Data Viewer
Location:
8 B1.1; 8 26.42 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (47192751..47300493)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (46739745..46847458)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6636 Neighboring gene predicted gene, 31111 Neighboring gene STARR-seq mESC enhancer starr_21392 Neighboring gene STARR-positive B cell enhancer mm9_chr8:47824808-47825109 Neighboring gene predicted gene, 16675 Neighboring gene VISTA enhancer mm9 Neighboring gene predicted gene, 31172 Neighboring gene STARR-seq mESC enhancer starr_21394 Neighboring gene STARR-positive B cell enhancer ABC_E6637 Neighboring gene STARR-positive B cell enhancer ABC_E10499 Neighboring gene predicted gene, 39170 Neighboring gene STARR-seq mESC enhancer starr_21395 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:48005439-48005671 Neighboring gene STARR-positive B cell enhancer ABC_E2864 Neighboring gene STARR-positive B cell enhancer ABC_E5003 Neighboring gene STARR-positive B cell enhancer ABC_E6638 Neighboring gene predicted gene, 53417 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 6 Neighboring gene STARR-seq mESC enhancer starr_21398 Neighboring gene predicted gene, 31231

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of the DNA binding domain of the mouse IRF-2 protein. Uegaki K, et al. Protein Eng, 1993 Feb. PMID 8475044
  2. Impaired class II transactivator expression in mice lacking interferon regulatory factor-2. Xi H, et al. Oncogene, 2001 Jul 12. PMID 11464288
  3. Cell cycle regulation of histone H4 gene transcription requires the oncogenic factor IRF-2. Vaughan PS, et al. J Biol Chem, 1998 Jan 2. PMID 9417064
  4. Forced expression of the interferon regulatory factor 2 oncoprotein causes polyploidy and cell death in FDC-P1 myeloid hematopoietic progenitor cells. Xie RL, et al. Cancer Res, 2002 May 1. PMID 11980642
  5. IRF-2 regulates B-cell proliferation and antibody production through distinct mechanisms. Minamino K, et al. Int Immunol, 2012 Sep. PMID 22773153

See all (81) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Mesenchymal stem cells (MSCs) from the mouse bone marrow show differential expression of interferon regulatory factors IRF-1 and IRF-2.
    Title: Mesenchymal stem cells (MSCs) from the mouse bone marrow show differential expression of interferon regulatory factors IRF-1 and IRF-2.
  2. Effect of interferon regulatory factor 2 on inflammatory response and oxidative stress in lipopolysaccharide-induced acute kidney injury.
    Title: Effect of interferon regulatory factor 2 on inflammatory response and oxidative stress in lipopolysaccharide-induced acute kidney injury.
  3. IRF2 contributes to myocardial infarction via regulation of GSDMD induced pyroptosis.
    Title: IRF2 contributes to myocardial infarction via regulation of GSDMD induced pyroptosis.
  4. IRF2 enhances RANKL-induced osteoclast differentiation via regulating NF-kappaB/NFATc1 signaling.
    Title: IRF2 enhances RANKL-induced osteoclast differentiation via regulating NF-κB/NFATc1 signaling.
  5. IRF2 maintains the stemness of colonic stem cells by limiting physiological stress from interferon.
    Title: IRF2 maintains the stemness of colonic stem cells by limiting physiological stress from interferon.
  6. Data show that interferon regulatory factor 2 (IRF2), a member of the interferon regulatory factor (IRF) family of transcription factors, was essential for the transcriptional activation of gasdermin-D (GSDMD).
    Title: IRF2 transcriptionally induces GSDMD expression for pyroptosis.
  7. The results point to a unique, cell-type selective role for IRF-2 in Innate lymphoid cells (ILC) development, acting at a discrete step critical for the generation of functionally competent Innate lymphoid cells precursors (ILCPs).
    Title: Generation of a common innate lymphoid cell progenitor requires interferon regulatory factor 2.
  8. The KRAS( *)-IRF2-CXCL3-CXCR2 axis drives colorectal cancer cell immune suppression and resistance to anti-PD-1 immunotherapy.
    Title: KRAS-IRF2 Axis Drives Immune Suppression and Immune Therapy Resistance in Colorectal Cancer.
  9. our data suggest that IRF2 is an important regulator of the proinflammatory response in macrophages by controlling HIF-1alpha-dependent glycolytic gene expression and glycolysis.
    Title: IFN Regulatory Factor 2 Inhibits Expression of Glycolytic Genes and Lipopolysaccharide-Induced Proinflammatory Responses in Macrophages.
  10. Data show that HCFC2 is a critical component of the IRF1 and IRF2 transcriptional machinery that regulates Tlr3 gene expression.
    Title: HCFC2 is needed for IRF1- and IRF2-dependent Tlr3 transcription and for survival during viral infections.
Submit: New GeneRIF Correction See all GeneRIFs (31)

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (4) 
  • Targeted (3)  1 citation

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC117893

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding ISO
Inferred from Sequence Orthology
more info
  
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription activator activity, RNA polymerase II-specific ISO
Inferred from Sequence Orthology
more info
  
enables DNA-binding transcription factor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables DNA-binding transcription factor activity ISO
Inferred from Sequence Orthology
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
  
enables sequence-specific double-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
  
involved_in defense response to virus ISO
Inferred from Sequence Orthology
more info
  
involved_in immune system process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 PubMed 
acts_upstream_of_or_within toll-like receptor 3 signaling pathway ISO
Inferred from Sequence Orthology
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
  
located_in focal adhesion ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
interferon regulatory factor 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008391.4 → NP_032417.3  interferon regulatory factor 2

    See identical proteins and their annotated locations for NP_032417.3

    Status: VALIDATED

    Source sequence(s)
    AK036652, AK132099
    Consensus CDS
    CCDS22295.1
    UniProtKB/Swiss-Prot
    P23906
    UniProtKB/TrEMBL
    Q2TAX8, Q3U2Z2, Q923E9
    Related
    ENSMUSP00000034041.8, ENSMUST00000034041.9
    Conserved Domains (1) summary
    pfam00605
    Location:7 → 112
    IRF; Interferon regulatory factor transcription factor

RNA

  1. NR_152560.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC116801, AC123751
    Related
    ENSMUST00000210284.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    47192751..47300493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509288.4 → XP_006509351.1  interferon regulatory factor 2 isoform X5

    See identical proteins and their annotated locations for XP_006509351.1

    UniProtKB/Swiss-Prot
    P23906
    UniProtKB/TrEMBL
    Q2TAX8, Q3U2Z2, Q923E9
    Conserved Domains (1) summary
    pfam00605
    Location:7 → 112
    IRF; Interferon regulatory factor transcription factor

  2. XM_011242175.4 → XP_011240477.1  interferon regulatory factor 2 isoform X1

    UniProtKB/TrEMBL
    Q2TAX8, Q923E9
    Conserved Domains (1) summary
    pfam00605
    Location:35 → 140
    IRF; Interferon regulatory factor transcription factor

  3. XM_006509289.5 → XP_006509352.1  interferon regulatory factor 2 isoform X5

    See identical proteins and their annotated locations for XP_006509352.1

    UniProtKB/Swiss-Prot
    P23906
    UniProtKB/TrEMBL
    Q2TAX8, Q3U2Z2, Q923E9
    Conserved Domains (1) summary
    pfam00605
    Location:7 → 112
    IRF; Interferon regulatory factor transcription factor

  4. XM_030243306.2 → XP_030099166.1  interferon regulatory factor 2 isoform X4

    UniProtKB/TrEMBL
    Q2TAX8, Q923E9
    Conserved Domains (1) summary
    pfam00605
    Location:12 → 117
    IRF; Interferon regulatory factor transcription factor

  5. XM_017312580.2 → XP_017168069.1  interferon regulatory factor 2 isoform X3

    UniProtKB/TrEMBL
    Q2TAX8, Q923E9
    Conserved Domains (1) summary
    pfam00605
    Location:28 → 133
    IRF; Interferon regulatory factor transcription factor

  6. XM_030243305.2 → XP_030099165.1  interferon regulatory factor 2 isoform X2

    UniProtKB/TrEMBL
    Q2TAX8, Q923E9
    Conserved Domains (1) summary
    pfam00605
    Location:35 → 140
    IRF; Interferon regulatory factor transcription factor

RNA

  1. XR_001778407.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P23906.1 GenPept UniProtKB/Swiss-Prot:P23906

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools