U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COCSUDRAFT_11301 TPR-like protein [ Coccomyxa subellipsoidea C-169 ]

Gene ID: 17045863, updated on 28-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
COCSUDRAFT_11301
Gene description
TPR-like protein
Locus tag
COCSUDRAFT_11301
Gene type
protein coding
RNA name
TPR-like protein
RefSeq status
PROVISIONAL
Organism
Coccomyxa subellipsoidea C-169 (strain: C-169)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Coccomyxaceae; Coccomyxa
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Exon count:
4

NW_005178042.1Genomic Context describing neighboring genes Neighboring gene PDR-like ABC transporter Neighboring gene tRNA-Met Neighboring gene tRNA-Xxx Neighboring gene hypothetical protein Neighboring gene plastidic ADP/ATP translocase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005178042.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Blanc G, et al. Genome Biol, 2012 May 25. PMID 22630137, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
TPR-like protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005178042.1 Reference assembly

    Range
    1847642..1849664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005651860.1 → XP_005651917.1  TPR-like protein, partial [Coccomyxa subellipsoidea C-169]

    See identical proteins and their annotated locations for XP_005651917.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    I0Z9Q4
    Conserved Domains (4) summary
    cd05804
    Location:97 → 230
    StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
    sd00006
    Location:18 → 48
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:54 → 86
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:18 → 84
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases