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COCSUDRAFT_34963 amidohydrolase [ Coccomyxa subellipsoidea C-169 ]

Gene ID: 17045869, updated on 28-Dec-2023

Summary

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Gene symbol
COCSUDRAFT_34963
Gene description
amidohydrolase
Locus tag
COCSUDRAFT_34963
Gene type
protein coding
RNA name
amidohydrolase
RefSeq status
PROVISIONAL
Organism
Coccomyxa subellipsoidea C-169 (strain: C-169)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Coccomyxaceae; Coccomyxa
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Genomic context

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Exon count:
8

NW_005178042.1Genomic Context describing neighboring genes Neighboring gene glycoside hydrolase Neighboring gene tRNA-Glu Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005178042.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Blanc G, et al. Genome Biol, 2012 May 25. PMID 22630137, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables IAA-Ala conjugate hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in auxin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
amidohydrolase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005178042.1 Reference assembly

    Range
    3635113..3638244 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005652236.1 → XP_005652293.1  amidohydrolase [Coccomyxa subellipsoidea C-169]

    See identical proteins and their annotated locations for XP_005652293.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    I0ZAT0
    Conserved Domains (2) summary
    COG1473
    Location:5 → 382
    AbgB; Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
    cl14876
    Location:5 → 381
    Zinc_peptidase_like; Zinc peptidases M18, M20, M28, and M42
Nucleotide Protein
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