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Zfp347 zinc finger protein 347 [ Rattus norvegicus (Norway rat) ]

Gene ID: 170902, updated on 2-Nov-2024

Summary

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Official Symbol
Zfp347provided by RGD
Official Full Name
zinc finger protein 347provided by RGD
Primary source
RGD:620185
See related
EnsemblRapid:ENSRNOG00000071023 AllianceGenome:RGD:620185
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Giot2
Summary
Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Orthologous to human ZNF14 (zinc finger protein 14). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 261.9), Heart (RPKM 36.6) and 9 other tissues See more
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Genomic context

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See Zfp347 in Genome Data Viewer
Location:
7q11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (8110793..8130161)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (7460543..7479378)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (9974310..9990960, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene serine and arginine rich splicing factor 7, pseudogene 7 Neighboring gene zinc finger protein 844 like, pseudogene 1 Neighboring gene zinc finger protein 844-like Neighboring gene zinc finger protein 938 Neighboring gene zinc finger protein 658B like, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Cloning and characterization of gonadotropin-inducible ovarian transcription factors (GIOT1 and -2) that are novel members of the (Cys)(2)-(His)(2)-type zinc finger protein family. Mizutani T, et al. Mol Endocrinol, 2001 Oct. PMID 11579202
  2. The novel testicular enrichment protein Cfap58 is required for Notch-associated ciliogenesis. Li ZZ, et al. Biosci Rep, 2020 Jan 31. PMID 31904090, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 347
Names
gonadotropin inducible ovarian transcription factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430215.1 → NP_001417144.1  zinc finger protein 347 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007

  2. NM_133390.2 → NP_596881.2  zinc finger protein 347 isoform 1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/TrEMBL
    A6K849
    Conserved Domains (4) summary
    COG5048
    Location:339 → 699
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:372 → 392
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:180 → 198
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:273 → 298
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    8110793..8130161
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063262943.1 → XP_063119013.1  zinc finger protein 347 isoform X1

  2. XM_039078333.2 → XP_038934261.1  zinc finger protein 347 isoform X2

    Related
    ENSRNOP00000050722.5, ENSRNOT00000044241.5
    Conserved Domains (5) summary
    COG5048
    Location:371 → 731
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:404 → 424
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:212 → 230
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 44
    KRAB; KRAB box
    pfam13465
    Location:305 → 330
    zf-H2C2_2; Zinc-finger double domain

  3. XM_063262945.1 → XP_063119015.1  zinc finger protein 347 isoform X3

    UniProtKB/TrEMBL
    A6K849

  4. XM_063262944.1 → XP_063119014.1  zinc finger protein 347 isoform X3

    UniProtKB/TrEMBL
    A6K849

  5. XM_063262946.1 → XP_063119016.1  zinc finger protein 347 isoform X3

    UniProtKB/TrEMBL
    A6K849
    Related
    ENSRNOP00000103806.1, ENSRNOT00000131530.1

  6. XM_039078337.2 → XP_038934265.1  zinc finger protein 347 isoform X4

    UniProtKB/TrEMBL
    A0A8I6GDJ0
    Related
    ENSRNOP00000084293.1, ENSRNOT00000103666.2
    Conserved Domains (4) summary
    COG5048
    Location:289 → 649
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:322 → 342
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:130 → 148
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:223 → 248
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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