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Slco6b1 solute carrier organic anion transporter family member 6B1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 170925, updated on 17-Aug-2024

Summary

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Symbol
Slco6b1provided by RGD
Full Name
solute carrier organic anion transporter family member 6B1provided by RGD
Primary source
RGD:620278
See related
EnsemblRapid:ENSRNOG00000019252 AllianceGenome:RGD:620278
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Tst1; GST-1
Summary
Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to be integral component of plasma membrane. Orthologous to human SLCO6A1 (solute carrier organic anion transporter family member 6A1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 230.7) See more
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Genomic context

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See Slco6b1 in Genome Data Viewer
Location:
9q36
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (104713945..104794649, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (97266655..97347336, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (104388232..104468005, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene solute carrier organic anion transporter family, member 4C1 Neighboring gene uncharacterized LOC102553020 Neighboring gene uncharacterized LOC134480422 Neighboring gene Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 40 Neighboring gene solute carrier organic anion transporter family member 6c1 like, pseudogene 1 Neighboring gene uncharacterized LOC134480421

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Xenobiotic and endobiotic transporter mRNA expression in the blood-testis barrier. Augustine LM, et al. Drug Metab Dispos, 2005 Jan. PMID 15494472
  2. Identification and characterization of novel rat and human gonad-specific organic anion transporters. Suzuki T, et al. Mol Endocrinol, 2003 Jul. PMID 12677006
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. a novel organic anion transporter expressed at high levels in the testis
    Title: Identification and characterization of novel rat and human gonad-specific organic anion transporters.
Submit: New GeneRIF Correction

General gene information

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Other Names

  • gonad-specific transporter 1
  • solute carrier organic anion transporter family member 6A1
  • solute carrier organic anion transporter family member 6A1-like
  • solute carrier organic anion transporter family, member 6b1
  • testis-specific transporter TST1

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables sodium-independent organic anion transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
  
involved_in sodium-independent organic anion transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in basolateral plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_185094.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    Related
    ENSRNOT00000026099.8

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    104713945..104794649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_133412.1: Suppressed sequence

    Description
    NM_133412.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

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