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col-45 Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 171605, updated on 2-Nov-2024

Summary

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Official Symbol
col-45
Official Full Name
Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein
Primary source
WormBase:WBGene00000622
Locus tag
CELE_F53G12.7
See related
AllianceGenome:WB:WBGene00000622
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See col-45 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003279.8 (115687..117498)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene Spermatocyte protein spe-8 Neighboring gene Growth-regulating factor;K Homology domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein
NP_001293264.1
  • Confirmed by transcript evidence
NP_490679.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    115687..117498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_058278.4 → NP_490679.1  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_490679.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O01799
    Conserved Domains (2) summary
    pfam01391
    Location:253 → 311
    Collagen; Collagen triple helix repeat (20 copies)
    smart01088
    Location:19 → 68
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain

  2. NM_001306335.3 → NP_001293264.1  Collagen triple helix repeat protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293264.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    V6CM19
    Conserved Domains (1) summary
    NF038329
    Location:81 → 244
    gly_rich_SclB; LPXTG-anchored collagen-like adhesin Scl2/SclB
Nucleotide Protein
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