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Y39G10AR.9 WD_REPEATS_REGION domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 171789, updated on 2-Nov-2024

Summary

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Official Symbol
Y39G10AR.9
Official Full Name
WD_REPEATS_REGION domain-containing protein
Primary source
WormBase:WBGene00021467
Locus tag
CELE_Y39G10AR.9
See related
AllianceGenome:WB:WBGene00021467
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be part of proteasome complex. Orthologous to human PAAF1 (proteasomal ATPase associated factor 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y39G10AR.9 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (2307267..2308975)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene TPX2 domain-containing protein Neighboring gene Ectopic P granules protein 2 Neighboring gene Inner centromere protein ARK-binding domain-containing protein Neighboring gene 5-methylcytosine rRNA methyltransferase nsun-4 Neighboring gene Tubulin-specific chaperone A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans. Robert VJ, et al. Development, 2023 Nov 1. PMID 37818613, Free PMC Article
  2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
WD_REPEATS_REGION domain-containing protein
NP_001249132.1
  • Partially confirmed by transcript evidence
NP_001249133.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    2307267..2308975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001262203.3 → NP_001249132.1  WD_REPEATS_REGION domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001249132.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95XR3
    Conserved Domains (2) summary
    sd00039
    Location:134 → 169
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:133 → 414
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. NM_001262204.2 → NP_001249133.1  WD_REPEATS_REGION domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001249133.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G4SF15
    Conserved Domains (2) summary
    sd00039
    Location:116 → 151
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:115 → 396
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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