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Y23H5B.5 U3 small nucleolar RNA-associated protein 15 homolog [ Caenorhabditis elegans ]

Gene ID: 171811, updated on 2-Nov-2024

Summary

Official Symbol
Y23H5B.5
Official Full Name
U3 small nucleolar RNA-associated protein 15 homolog
Primary source
WormBase:WBGene00021276
Locus tag
CELE_Y23H5B.5
See related
AllianceGenome:WB:WBGene00021276
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in positive regulation of transcription by RNA polymerase I and rRNA processing. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human UTP15 (UTP15 small subunit processome component). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See Y23H5B.5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
6
Sequence:
Chromosome: I; NC_003279.8 (2498134..2506259)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Eukaryotic translation initiation factor 3 subunit I;Serine-threonine kinase receptor-associated protein Neighboring gene ATP-dependent RNA helicase;ATP-dependent rRNA helicase SPB4-like C-terminal extension domain-containing protein Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase I IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in rRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
U3 small nucleolar RNA-associated protein 15 homolog
NP_490990.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    2498134..2506259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_058589.5NP_490990.2  U3 small nucleolar RNA-associated protein 15 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_490990.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N477
    Conserved Domains (3) summary
    sd00039
    Location:4480
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:362508
    UTP15_C; UTP15 C terminal
    cl29593
    Location:40319
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...