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K07A3.3 ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [ Caenorhabditis elegans ]

Gene ID: 171817, updated on 2-Nov-2024

Summary

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Official Symbol
K07A3.3
Official Full Name
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial
Primary source
WormBase:WBGene00019461
Locus tag
CELE_K07A3.3
See related
AllianceGenome:WB:WBGene00019461
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable ATP binding activity and ATP hydrolysis activity. Predicted to be involved in proteolysis involved in protein catabolic process. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in erythropoietic protoporphyria. Orthologous to human CLPX (caseinolytic mitochondrial matrix peptidase chaperone subunit X). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See K07A3.3 in Genome Data Viewer
Location:
chromosome: I
Exon count:
9
Sequence:
Chromosome: I; NC_003279.8 (2599979..2602650)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene fructose-bisphosphatase Neighboring gene SSD domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Alpha-catulin Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables ATP binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  
involved_in proteolysis involved in protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in mitochondrial matrix IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial
NP_001021562.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    2599979..2602650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001026391.4 → NP_001021562.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001021562.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q65XY4
    Conserved Domains (3) summary
    smart01086
    Location:413 → 497
    ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein
    COG1220
    Location:99 → 510
    HslU; ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
    pfam07724
    Location:194 → 406
    AAA_2; AAA domain (Cdc48 subfamily)

RNA

  1. NR_131362.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

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