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syp-5 ING domain-containing protein;PH domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 171894, updated on 2-Nov-2024

Summary

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Official Symbol
syp-5
Official Full Name
ING domain-containing protein;PH domain-containing protein
Primary source
WormBase:WBGene00021832
Locus tag
CELE_Y54E10A.12
See related
AllianceGenome:WB:WBGene00021832
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in germ line. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See syp-5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
9
Sequence:
Chromosome: I; NC_003279.8 (3193528..3198838, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Ribosome production factor 2 homolog Neighboring gene E3 ubiquitin-protein ligase listerin Neighboring gene pseudo Neighboring gene DOMON domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of novel synaptonemal complex components in C. elegans. Hurlock ME, et al. J Cell Biol, 2020 May 4. PMID 32211899, Free PMC Article
  2. Sexual dimorphic regulation of recombination by the synaptonemal complex in C. elegans. Cahoon CK, et al. Elife, 2023 Oct 5. PMID 37796106, Free PMC Article
  3. Multivalent weak interactions between assembly units drive synaptonemal complex formation. Zhang Z, et al. J Cell Biol, 2020 May 4. PMID 32211900, Free PMC Article
  4. SYP-5 regulates meiotic thermotolerance in Caenorhabditis elegans. Liu Y, et al. J Mol Cell Biol, 2021 Dec 6. PMID 34081106, Free PMC Article
  5. The dynamic recruitment of LAB proteins senses meiotic chromosome axis differentiation in C. elegans. Wang R, et al. J Cell Biol, 2024 Feb 5. PMID 38010234, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SYP-5 regulates meiotic thermotolerance in Caenorhabditis elegans.
    Title: SYP-5 regulates meiotic thermotolerance in Caenorhabditis elegans.
  2. Multivalent weak interactions between assembly units drive synaptonemal complex formation.
    Title: Multivalent weak interactions between assembly units drive synaptonemal complex formation.
  3. Identification of novel synaptonemal complex components in C. elegans.
    Title: Identification of novel synaptonemal complex components in C. elegans.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

General protein information

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Preferred Names
ING domain-containing protein;PH domain-containing protein
NP_001379292.1
  • Confirmed by transcript evidence
NP_491120.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    3193528..3198838 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_058719.8 → NP_491120.1  PH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491120.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N3E8
    Conserved Domains (1) summary
    COG1196
    Location:68 → 355
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. NM_001393184.1 → NP_001379292.1  ING domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A6V7QYG0
Nucleotide Protein
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