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rpl-13 Large ribosomal subunit protein eL13 [ Caenorhabditis elegans ]

Gene ID: 171949, updated on 2-Nov-2024

Summary

Official Symbol
rpl-13
Official Full Name
Large ribosomal subunit protein eL13
Primary source
WormBase:WBGene00004425
Locus tag
CELE_C32E8.2
See related
AllianceGenome:WB:WBGene00004425
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytosol. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL13 (ribosomal protein L13). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See rpl-13 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003279.8 (3788036..3788896)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Tubulin polymerization-promoting protein homolog Neighboring gene SSD domain-containing protein Neighboring gene Ethylmalonyl-CoA decarboxylase Neighboring gene RING-type domain-containing protein

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISS
Inferred from Sequence or Structural Similarity
more info
 
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Large ribosomal subunit protein eL13
NP_001021017.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    3788036..3788896
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001025846.6NP_001021017.1  Large ribosomal subunit protein eL13 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001021017.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P91128, Q86GU2
    Conserved Domains (1) summary
    pfam01294
    Location:11184
    Ribosomal_L13e; Ribosomal protein L13e

RNA

  1. NR_136367.1 RNA Sequence

    Status: REVIEWED