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Mc1r melanocortin 1 receptor [ Mus musculus (house mouse) ]

Gene ID: 17199, updated on 29-Oct-2024

Summary

Official Symbol
Mc1rprovided by MGI
Official Full Name
melanocortin 1 receptorprovided by MGI
Primary source
MGI:MGI:99456
See related
Ensembl:ENSMUSG00000074037 AllianceGenome:MGI:99456
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
e; Tob; Mcr1; Mshra
Summary
Enables melanocyte-stimulating hormone receptor activity. Involved in several processes, including phospholipase C-activating G protein-coupled receptor signaling pathway; positive regulation of cAMP/PKA signal transduction; and positive regulation of transcription by RNA polymerase II. Acts upstream of or within melanin biosynthetic process; pigmentation; and sensory perception of pain. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including central nervous system; foregut; musculature; sensory organ; and skin. Human ortholog(s) of this gene implicated in familial melanoma; major depressive disorder; melanoma; oculocutaneous albinism type II; and pigmentation disease. Orthologous to human MC1R (melanocortin 1 receptor). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See Mc1r in Genome Data Viewer
Location:
8 E1; 8 72.1 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (124133839..124137483)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (123407082..123410744)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_22969 Neighboring gene STARR-seq mESC enhancer starr_22970 Neighboring gene spire type actin nucleation factor 2 Neighboring gene STARR-positive B cell enhancer ABC_E2278 Neighboring gene transcription factor 25 (basic helix-loop-helix) Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:125928490-125928752 Neighboring gene STARR-seq mESC enhancer starr_22972 Neighboring gene tubulin, beta 3 class III Neighboring gene differentially expressed in FDCP 8

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables hormone binding IEA
Inferred from Electronic Annotation
more info
 
enables melanocortin receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables melanocyte-stimulating hormone receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables melanocyte-stimulating hormone receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables melanocyte-stimulating hormone receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 
enables ubiquitin protein ligase binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in UV-damage excision repair IEA
Inferred from Electronic Annotation
more info
 
involved_in UV-damage excision repair ISO
Inferred from Sequence Orthology
more info
 
involved_in adenylate cyclase-activating G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in adenylate cyclase-activating G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in adenylate cyclase-activating G protein-coupled receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in intracellular signal transduction IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within melanin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of tumor necrosis factor production IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of tumor necrosis factor production ISO
Inferred from Sequence Orthology
more info
 
involved_in phospholipase C-activating G protein-coupled receptor signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within pigmentation IMP
Inferred from Mutant Phenotype
more info
 
involved_in positive regulation of cAMP/PKA signal transduction IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of feeding behavior IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within sensory perception of pain IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
melanocyte-stimulating hormone receptor
Names
MC1-R
MSH-R
extension recessive yellow
melanocortin receptor 1
tobacco darkening

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008559.3NP_032585.2  melanocyte-stimulating hormone receptor

    See identical proteins and their annotated locations for NP_032585.2

    Status: VALIDATED

    Source sequence(s)
    AC122266
    Consensus CDS
    CCDS22756.1
    UniProtKB/Swiss-Prot
    Q01727, Q75NA3
    UniProtKB/TrEMBL
    A0A0B6VKM9, A0A0B6VKP5, A0A0B6VKR0, A0A0B6VNE1, A0A0B6VTI1, A0A0B6VTI5, A0A0B6VTJ4, A0A0B6VTK2, Q75NA2
    Related
    ENSMUSP00000095929.3, ENSMUST00000098324.4
    Conserved Domains (2) summary
    pfam00001
    Location:53296
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:43172
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    124133839..124137483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)