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C44E4.5 NudC domain-containing protein 1 [ Caenorhabditis elegans ]

Gene ID: 172067, updated on 2-Nov-2024

Summary

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Official Symbol
C44E4.5
Official Full Name
NudC domain-containing protein 1
Primary source
WormBase:WBGene00016654
Locus tag
CELE_C44E4.5
See related
AllianceGenome:WB:WBGene00016654
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in cytoplasm and nucleus. Orthologous to human NUDCD1 (NudC domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C44E4.5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
9
Sequence:
Chromosome: I; NC_003279.8 (4605655..4610221)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Ell-associated factor Eaf Neighboring gene Nucleic acid-binding, OB-fold protein Neighboring gene UBR-type domain-containing protein Neighboring gene ncRNA Neighboring gene Lupus La protein Neighboring gene Acyl-CoA-binding protein homolog 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans. Suen KM, et al. Nat Commun, 2020 Aug 25. PMID 32843637, Free PMC Article
  2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NudC domain-containing protein 1
NP_491406.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    4605655..4610221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059005.6 → NP_491406.2  NudC domain-containing protein 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491406.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A6PVA1
    Conserved Domains (1) summary
    cl00175
    Location:256 → 338
    alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.
Nucleotide Protein
Heading Accession and Version

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