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lmd-2 LysM domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 172073, updated on 2-Nov-2024

Summary

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Official Symbol
lmd-2
Official Full Name
LysM domain-containing protein
Primary source
WormBase:WBGene00015008
Locus tag
CELE_B0041.3
See related
AllianceGenome:WB:WBGene00015008
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Orthologous to human LYSMD1 (LysM domain containing 1) and LYSMD2 (LysM domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See lmd-2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003279.8 (4644642..4645659)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Aspartate aminotransferase Neighboring gene ncRNA Neighboring gene RanBP2-type domain-containing protein Neighboring gene Large ribosomal subunit protein uL4 Neighboring gene ncRNA Neighboring gene Plus3 domain-containing protein Neighboring gene EamA domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovery of novel alternatively spliced C. elegans transcripts by computational analysis of SAGE data. Ruzanov P, et al. BMC Genomics, 2007 Nov 30. PMID 18053145, Free PMC Article
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
LysM domain-containing protein
NP_491415.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    4644642..4645659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059014.3 → NP_491415.2  LysM domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    O02055
    Conserved Domains (1) summary
    smart00257
    Location:50 → 93
    LysM; Lysin motif
Nucleotide Protein
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